@prefix : <http://purl.allotrope.org/voc/afo/domain/REC/2025/06/pat#> .
@prefix cl: <http://purl.obolibrary.org/obo/CL> .
@prefix go: <http://purl.obolibrary.org/obo/GO> .
@prefix ro: <http://purl.obolibrary.org/obo/RO> .
@prefix bfo: <http://purl.obolibrary.org/obo/BFO> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix iao: <http://purl.obolibrary.org/obo/IAO> .
@prefix obi: <http://purl.obolibrary.org/obo/OBI> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix af-c: <http://purl.allotrope.org/ontologies/common#> .
@prefix af-e: <http://purl.allotrope.org/ontologies/equipment#> .
@prefix af-m: <http://purl.allotrope.org/ontologies/material#> .
@prefix af-p: <http://purl.allotrope.org/ontologies/process#> .
@prefix af-q: <http://purl.allotrope.org/ontologies/quality#> .
@prefix af-r: <http://purl.allotrope.org/ontologies/result#> .
@prefix af-x: <http://purl.allotrope.org/ontologies/property#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix af-cur: <http://purl.allotrope.org/ontologies/curation#> .
@base <http://purl.allotrope.org/voc/afo/domain/REC/2025/06/pat#> .

<http://purl.allotrope.org/voc/afo/domain/REC/2025/06/pat> rdf:type owl:Ontology ;
                                                                      owl:versionIRI <http://purl.allotrope.org/voc/afo/domain/REC/2025/06/pat> ;
                                                                      owl:imports <http://purl.allotrope.org/voc/afo/REC/2025/06/afo> ,
                                                                                  <http://purl.allotrope.org/voc/afo/domain/REC/2025/06/ir> ,
                                                                                  <http://purl.allotrope.org/voc/afo/domain/REC/2025/06/mixing> ,
                                                                                  <http://purl.allotrope.org/voc/afo/domain/REC/2025/06/ph> ,
                                                                                  <http://purl.allotrope.org/voc/afo/domain/REC/2025/06/raman> ;
                                                                      dct:contributor <http://www.allotrope.org> ;
                                                                      dct:issued "2025-06-25T12:00:00Z"^^xsd:dateTime ;
                                                                      dct:license <http://purl.allotrope.org/voc/creative-commons-attribution-license> ;
                                                                      dct:modified "2025-04-04T12:00:00Z"^^xsd:dateTime ;
                                                                      dct:publisher <http://www.allotrope.org> ;
                                                                      dct:rights <http://purl.allotrope.org/voc/attribution> ,
                                                                                 <http://purl.allotrope.org/voc/copyright> ;
                                                                      dct:rightsHolder <http://www.allotrope.org> ;
                                                                      dct:title "AFO PAT Domain Ontology (REC/2025/06)" ;
                                                                      owl:priorVersion <http://purl.allotrope.org/voc/afo/domain/REC/2025/03/pat> ;
                                                                      owl:versionInfo "REC/2025/06" .

#################################################################
#    Annotation properties
#################################################################

###  http://purl.allotrope.org/ontologies/property#AFX_0002796
af-x:AFX_0002796 rdf:type owl:AnnotationProperty .


###  http://purl.allotrope.org/ontologies/property#AFX_0002798
af-x:AFX_0002798 rdf:type owl:AnnotationProperty .


###  http://purl.allotrope.org/ontologies/property#AFX_0002809
af-x:AFX_0002809 rdf:type owl:AnnotationProperty .


###  http://purl.org/dc/terms/source
dct:source rdf:type owl:AnnotationProperty .


###  http://www.w3.org/2004/02/skos/core#altLabel
skos:altLabel rdf:type owl:AnnotationProperty .


###  http://www.w3.org/2004/02/skos/core#changeNote
skos:changeNote rdf:type owl:AnnotationProperty .


###  http://www.w3.org/2004/02/skos/core#definition
skos:definition rdf:type owl:AnnotationProperty .


###  http://www.w3.org/2004/02/skos/core#example
skos:example rdf:type owl:AnnotationProperty .


###  http://www.w3.org/2004/02/skos/core#note
skos:note rdf:type owl:AnnotationProperty .


###  http://www.w3.org/2004/02/skos/core#prefLabel
skos:prefLabel rdf:type owl:AnnotationProperty .


###  http://www.w3.org/2004/02/skos/core#scopeNote
skos:scopeNote rdf:type owl:AnnotationProperty .


#################################################################
#    Classes
#################################################################

###  http://purl.allotrope.org/ontologies/equipment#AFE_0002224
af-e:AFE_0002224 rdf:type owl:Class ;
                 rdfs:subClassOf af-e:AFE_0000528 ,
                                 af-e:AFE_0002226 ;
                 skos:definition "A reactor jacket is a jacket that controls the temperature of a reactor. [Allotrope]" ;
                 skos:prefLabel "reactor jacket" .


###  http://purl.allotrope.org/ontologies/result#AFR_0002053
af-r:AFR_0002053 rdf:type owl:Class ;
                 rdfs:subClassOf af-r:AFR_0002056 ;
                 skos:altLabel "reaction temperature profile result" ;
                 skos:definition "A reaction temperature profile is a profile that quantifies the temperature of the reaction solution over time in a synthesis. [Allotrope]" ;
                 skos:prefLabel "reaction temperature profile" .


###  http://purl.allotrope.org/ontologies/result#AFR_0002054
af-r:AFR_0002054 rdf:type owl:Class ;
                 rdfs:subClassOf af-r:AFR_0002056 ;
                 skos:altLabel "jacket temperature profile result" ;
                 skos:definition "A jacket temperature profile is a profile that quantifies the temperature profile of the reactor jacket over time. [Allotrope]" ;
                 skos:prefLabel "jacket temperature profile" .


###  http://purl.allotrope.org/ontologies/result#AFR_0002341
af-r:AFR_0002341 rdf:type owl:Class ;
                 rdfs:subClassOf af-r:AFR_0000992 ,
                                 <http://purl.org/linked-data/cube#DataSet> ,
                                 [ rdf:type owl:Restriction ;
                                   owl:onProperty [ owl:inverseOf af-x:AFX_0002737
                                                  ] ;
                                   owl:someValuesFrom af-r:AFR_0002053
                                 ] ;
                 skos:definition "A reaction temperature data cube is a data cube that represents the reaction temperature over time. [Allotrope]" ;
                 skos:prefLabel "reaction temperature data cube" .


###  http://purl.allotrope.org/ontologies/result#AFR_0002342
af-r:AFR_0002342 rdf:type owl:Class ;
                 rdfs:subClassOf af-r:AFR_0000992 ,
                                 <http://purl.org/linked-data/cube#DataSet> ,
                                 [ rdf:type owl:Restriction ;
                                   owl:onProperty [ owl:inverseOf af-x:AFX_0002737
                                                  ] ;
                                   owl:someValuesFrom af-r:AFR_0002054
                                 ] ;
                 skos:definition "A jacket temperature data cube is a data cube that represents the jacket temperature over time. [Allotrope]" ;
                 skos:prefLabel "jacket temperature data cube" .


###  http://purl.allotrope.org/ontologies/result#AFR_0003045
af-r:AFR_0003045 rdf:type owl:Class ;
                 rdfs:subClassOf iao:_0000310 ,
                                 [ rdf:type owl:Restriction ;
                                   owl:onProperty ro:_0002351 ;
                                   owl:someValuesFrom af-r:AFR_0003046
                                 ] ;
                 skos:definition "An automated reactor aggregate document is a document that aggregates automated reactor documents. [Allotrope]" ;
                 skos:prefLabel "automated reactor aggregate document" .


###  http://purl.allotrope.org/ontologies/result#AFR_0003046
af-r:AFR_0003046 rdf:type owl:Class ;
                 rdfs:subClassOf iao:_0000310 ,
                                 [ rdf:type owl:Restriction ;
                                   owl:onProperty iao:_0000136 ;
                                   owl:someValuesFrom [ owl:intersectionOf ( af-p:AFP_0002680
                                                                             [ rdf:type owl:Restriction ;
                                                                               owl:onProperty ro:_0000057 ;
                                                                               owl:someValuesFrom af-e:AFE_0001519
                                                                             ]
                                                                           ) ;
                                                        rdf:type owl:Class
                                                      ]
                                 ] ;
                 skos:definition "An automated reactor document is a document that encompasses the information associated with an automated reactor run. [Allotrope]" ;
                 skos:prefLabel "automated reactor document" .


#################################################################
#    Individuals
#################################################################

###  http://www.allotrope.org
<http://www.allotrope.org> rdf:type owl:NamedIndividual ,
                                    foaf:Organization ;
                           foaf:name "Allotrope Foundation" .


###  http://purl.allotrope.org/voc/attribution
<http://purl.allotrope.org/voc/attribution> rdf:type owl:NamedIndividual ,
                                                     dct:RightsStatement ;
                                            dct:description """
These taxonomies contain material or may constitute derivative works of material which may be subject to copyright by one of the following organizations.  By using these taxonomies, you agree to the following terms and conditions applicable to its contents:
******************************************************************************
Copyright Notice and Terms for IUPAC Gold Book
______________________________________________________________________________
Copyright © 1998, Regents of the University of California
All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
******************************************************************************
Copyright Notice and Terms for PSI-MS (Proteomics Standards Initiative - Mass Spectrometry) Mass spectrometer output files and spectra interpretation
_____________________________________________________________________________
Created by Matt Chambers, Andreas Bertsch, Marius Kallhardt, Eric Deutsch Fredrik Levander, Pierre-Alain Binz, and Gerhard Mayer. Publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group. This work is used pursuant to a Creative Commons license available here: http://creativecommons.org/licenses/by/3.0/legalcode

******************************************************************************
Attribution Notice for National Center for Biomedical Ontology materials.

This work contains material from the Cell Ontology and Clinical Measurement Ontology, available here: http://bioportal.bioontology.org/.
******************************************************************************
Attribution Notice for ChEBI
This work contains material from the European Bioinformatics Institute’s ChEBI database.
******************************************************************************
Attribution Notice for Quantities Units Dimensions Data Types (http://www.qudt.org/)
This work contains content from www.qudt.org and is used pursuant to a Creative Commons License available here: http://creativecommons.org/licenses/by-sa/3.0/us/legalcode. The original work may have been modified.
******************************************************************************
Copyright and Attribution Notice for Dublin Core Metadata Initiative Document
This work contains material from the following DCMI document used pursuant to a creative commons license available here: https://creativecommons.org/licenses/by/4.0/legalcode. This material may have been modified or changed.
Timestamped URL:          http://dublincore.org/documents/2012/06/14/dcmi-terms/
Date Issued:                       2012-06-14
Document Status:            This is a DCMI Recommendation.
Copyright © 1995-2015 DCMI. All Rights Reserved. DCMI liability, trademark/service mark, document use and software licensing rules apply.
******************************************************************************

""" ;
                                            dct:title "Derivative works attribution" .


###  http://purl.allotrope.org/voc/copyright
<http://purl.allotrope.org/voc/copyright> rdf:type owl:NamedIndividual ,
                                                   dct:RightsStatement ;
                                          dct:description "Copyright © 2015-2025 Allotrope Foundation" ;
                                          dct:rightsHolder <http://www.allotrope.org> ;
                                          dct:title "Copyright © 2015-2025 Allotrope Foundation" .


###  http://purl.allotrope.org/voc/creative-commons-attribution-license
<http://purl.allotrope.org/voc/creative-commons-attribution-license> rdf:type owl:NamedIndividual ,
                                                                              dct:LicenseDocument ;
                                                                     dct:description """This work is licensed under a Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0/.

THESE MATERIALS ARE PROVIDED \"AS IS\" AND ALLOTROPE EXPRESSLY DISCLAIMS ALL WARRANTIES, EXPRESS, IMPLIED OR STATUTORY, INCLUDING, WITHOUT LIMITATION, THE WARRANTIES OF NON-INFRINGEMENT, TITLE, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.

Copyright © 2015-2025 Allotrope Foundation
""" ;
                                                                     dct:title "Creative Commons Attribution 4.0 International Public License" .


###  Generated by the OWL API (version 5.1.19) https://github.com/owlcs/owlapi/
