@prefix dct: .
@prefix owl: .
@prefix rdf: .
@prefix xml: .
@prefix xsd: .
@prefix af-c: .
@prefix af-e: .
@prefix af-m: .
@prefix af-p: .
@prefix af-q: .
@prefix af-r: .
@prefix af-x: .
@prefix rdfs: .
@prefix skos: .
@prefix af-cur: .
@base .
rdf:type owl:Ontology ;
owl:versionIRI ;
owl:imports ;
owl:priorVersion ;
dct:rights ;
dct:modified "2018-04-12T12:30:00Z"^^xsd:dateTime ;
dct:rights ;
dct:license ;
dct:issued "2017-11-24T04:10:00Z"^^xsd:dateTime ;
dct:title "AFO Plate Reader Domain Ontology - working draft" ;
owl:versionInfo "WD/2018/04" .
#################################################################
#
# Annotation properties
#
#################################################################
### http://purl.allotrope.org/ontologies/property#AFX_0002796
af-x:AFX_0002796 rdf:type owl:AnnotationProperty .
### http://purl.allotrope.org/ontologies/property#AFX_0002798
af-x:AFX_0002798 rdf:type owl:AnnotationProperty .
### http://purl.allotrope.org/ontologies/property#AFX_0002809
af-x:AFX_0002809 rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/source
dct:source rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#altLabel
skos:altLabel rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#changeNote
skos:changeNote rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#definition
skos:definition rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#example
skos:example rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#note
skos:note rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#prefLabel
skos:prefLabel rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#scopeNote
skos:scopeNote rdf:type owl:AnnotationProperty .
#################################################################
#
# Classes
#
#################################################################
### http://purl.allotrope.org/ontologies/equipment#AFE_0001507
af-e:AFE_0001507 rdf:type owl:Class ;
rdfs:subClassOf af-e:AFE_0001506 ;
skos:altLabel "ECL plate reader" ;
skos:definition "Plate reader for electrochemiluminescent labels. [Allotrope]" ;
skos:prefLabel "electrochemiluminescence plate reader" .
### http://purl.allotrope.org/ontologies/equipment#AFE_0001508
af-e:AFE_0001508 rdf:type owl:Class ;
rdfs:subClassOf af-e:AFE_0001506 ;
dct:source "https://en.wikipedia.org/wiki/Plate_reader" ;
skos:altLabel "FI plate reader" ,
"fluorescence plate reader" ;
skos:definition "Plate reader that uses fluorescence intensity detection. In this type of instrumentation, a first optical system (excitation system) illuminates the sample using a specific wavelength (selected by an optical filter, or a monochromator). As a result of the illumination, the sample emits light (it fluoresces) and a second optical system (emission system) collects the emitted light, separates it from the excitation light (using a filter or monochromator system), and measures the signal using a light detector such as a photomultiplier tube (PMT). [Wikipedia]" ;
skos:prefLabel "fluorescence intensity plate reader" .
### http://purl.allotrope.org/ontologies/equipment#AFE_0001509
af-e:AFE_0001509 rdf:type owl:Class ;
rdfs:subClassOf af-e:AFE_0001506 ;
dct:source "https://en.wikipedia.org/wiki/Limulus_amebocyte_lysate" ;
skos:altLabel "limulus amebocyte lysate plate reader" ;
skos:definition "Plate reader using LAL tests. [Allotrope]" ;
skos:prefLabel "LAL plate reader" .
### http://purl.allotrope.org/ontologies/equipment#AFE_0001510
af-e:AFE_0001510 rdf:type owl:Class ;
rdfs:subClassOf af-e:AFE_0001506 ;
dct:source "https://en.wikipedia.org/wiki/Plate_reader" ;
skos:definition "Plate reader that uses absorbance detection. A light source illuminates the sample using a specific wavelength (selected by an optical filter, or a monochromator), and a light detector located on the other side of the well measures how much of the initial (100%) light is transmitted through the sample: the amount of transmitted light will typically be related to the concentration of the molecule of interest. [Wikipedia]" ;
skos:prefLabel "absorbance plate reader" .
### http://purl.allotrope.org/ontologies/equipment#AFE_0001511
af-e:AFE_0001511 rdf:type owl:Class ;
rdfs:subClassOf af-e:AFE_0001506 ;
dct:source "https://en.wikipedia.org/wiki/Plate_reader" ;
skos:definition "Plate reader that uses luminescence detection. Luminescence is the result of a chemical or biochemical reaction. A typical luminescence optical system consists of a light-tight reading chamber and a PMT detector. [Wikipedia]" ;
skos:prefLabel "luminescence plate reader" .
### http://purl.allotrope.org/ontologies/equipment#AFE_0001512
af-e:AFE_0001512 rdf:type owl:Class ;
rdfs:subClassOf af-e:AFE_0001506 ;
skos:altLabel "TR-FRET plate reader" ,
"TRF plate reader" ;
skos:definition "Plate reader that uses time-resolved fluorescence measurement. Time-resolved fluorescence (TRF) measurement is very similar to fluorescence intensity (FI) measurement. TRF relies on the use of very specific fluorescent molecules, called lanthanides, that have the unusual property of emitting over long periods of time (measured in milliseconds) after excitation, when most standard fluorescent dyes (e.g. fluorescein) emit within a few nanoseconds of being excited. As a result, it is possible to excite lanthanides using a pulsed light source (Xenon flash lamp or pulsed laser for example), and measure after the excitation pulse. [Wikipedia]" ;
skos:prefLabel "time-resolved fluorescence plate reader" .
### http://purl.allotrope.org/ontologies/equipment#AFE_0001513
af-e:AFE_0001513 rdf:type owl:Class ;
rdfs:subClassOf af-e:AFE_0001506 ;
skos:definition "A plate reader that uses fluorescence polarization measurements. Fluorescence polarization measurement is also very close to FI detection. The difference is that the optical system includes polarizing filters on the light path: the samples in the microplate are excited using polarized light (instead of non-polarized light in FI and TRF modes). Depending on the mobility of the fluorescent molecules found in the wells, the light emitted will either be polarized or not. [Wikipedia]" ;
skos:prefLabel "fluorescence polarization plate reader" .
### http://purl.allotrope.org/ontologies/equipment#AFE_0001514
af-e:AFE_0001514 rdf:type owl:Class ;
rdfs:subClassOf af-e:AFE_0001506 ;
dct:source "https://en.wikipedia.org/wiki/Plate_reader" ;
skos:definition "A plate reader that combines multiple detection methods. [Wikipedia]" ;
skos:prefLabel "multi-mode plate reader" .
#################################################################
#
# Individuals
#
#################################################################
### http://purl.allotrope.org/voc/attribution
rdf:type owl:NamedIndividual ,
dct:RightsStatement ;
dct:description """
These taxonomies contain material or may constitute derivative works of material which may be subject to copyright by one of the following organizations. By using these taxonomies, you agree to the following terms and conditions applicable to its contents:
******************************************************************************
Copyright Notice and Terms for IUPAC Gold Book
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Copyright © 1998, Regents of the University of California
All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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Copyright Notice and Terms for PSI-MS (Proteomics Standards Initiative - Mass Spectrometry) Mass spectrometer output files and spectra interpretation
_____________________________________________________________________________
Created by Matt Chambers, Andreas Bertsch, Marius Kallhardt, Eric Deutsch Fredrik Levander, Pierre-Alain Binz, and Gerhard Mayer. Publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group. This work is used pursuant to a Creative Commons license available here: http://creativecommons.org/licenses/by/3.0/legalcode
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Attribution Notice for National Center for Biomedical Ontology materials.
This work contains material from the Cell Ontology and Clinical Measurement Ontology, available here: http://bioportal.bioontology.org/.
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Attribution Notice for ChEBI
This work contains material from the European Bioinformatics Institute’s ChEBI database.
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Attribution Notice for Quantities Units Dimensions Data Types (http://www.qudt.org/)
This work contains content from www.qudt.org and is used pursuant to a Creative Commons License available here: http://creativecommons.org/licenses/by-sa/3.0/us/legalcode. The original work may have been modified.
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Copyright and Attribution Notice for Dublin Core Metadata Initiative Document
This work contains material from the following DCMI document used pursuant to a creative commons license available here: https://creativecommons.org/licenses/by/4.0/legalcode. This material may have been modified or changed.
Timestamped URL: http://dublincore.org/documents/2012/06/14/dcmi-terms/
Date Issued: 2012-06-14
Document Status: This is a DCMI Recommendation.
Copyright © 1995-2015 DCMI. All Rights Reserved. DCMI liability, trademark/service mark, document use and software licensing rules apply.
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""" ;
dct:title "Derivative works attribution" .
### http://purl.allotrope.org/voc/copyright
rdf:type owl:NamedIndividual ,
dct:RightsStatement ;
dct:description "(c) 2017 Allotrope Foundation" ;
dct:title "(c) 2017 Allotrope Foundation" .
### http://purl.allotrope.org/voc/creative-commons-attribution-license
rdf:type owl:NamedIndividual ,
dct:LicenseDocument ;
dct:description """This work is licensed under a Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0/.
THESE MATERIALS ARE PROVIDED \"AS IS\" AND ALLOTROPE EXPRESSLY DISCLAIMS ALL WARRANTIES, EXPRESS, IMPLIED OR STATUTORY, INCLUDING, WITHOUT LIMITATION, THE WARRANTIES OF NON-INFRINGEMENT, TITLE, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
Copyright © 2015-2018 Allotrope Foundation
""" ;
dct:title "Creative Commons Attribution 4.0 International Public License" .
### http://purl.allotrope.org/voc/afo/domain/WD/2018/04/plate-reader
rdf:type owl:NamedIndividual ;
dct:rightsHolder .
### Generated by the OWL API (version 4.1.3) https://github.com/owlcs/owlapi